Biomolecule Databases

Biomolecule Dabases


  • NetPhosk 1.0 Server
    The NetPhosK 1.0 server produces neural network predictions of kinase specific eukaryotic protein phosphoylation sites.
  • BioMeta Database
    BioMeta is a database of metabolites and metabolic reactions. Its contents are largely based on the KEGG Ligand database.
  • Glycan Database
    Provides a one-stop overview of the latest research in glycobiology.
  • OWL, Composite Protein Sequence Database
    A non-redundant composite of 4 publicly-available primary sources: SWISS-PROT, PIR (1-3), GenBank (translation) and NRL-3D
  • CATH, Protein Structure Classification
    CATH is a hierarchical classification of protein domain structures, which clusters proteins at four major levels, Class , Architecture, Topology and Homologous superfamily.
  • iHOP, information Hyperlinked Over Proteins
    Contains more than 1,500 organisms and 80,000 genes.
  • Nucleic Acids Database
    A repository of three-dimensional structural information about nucleic acids.
  • DisProt
    The Database of Protein Disorder (DisProt) is a curated database that provides information about proteins that lack fixed 3D structure in their putatively native states, either in their entirety or in part.
  • Human Protein Reference Database
    The Human Protein Reference Database represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.
  • Flexweb; Analysis of Flexibility in Biomolecules
    Flexweb is a portal to research in the flexibility of networks and associated software.
  • Proteins Databse at National Chemical Laboratory
    The MOLTABLE portal is established for small molecules in chemoinformatics context and it is now being extended for the biomolecules especially the protein data.
  • Human Metabolome Database
    Human Metabolome Project has assembled an inventory of about 2,500 molecules produced by metabolic reactions in body tissues and fluids. The database is designed to contain or link three kinds of data: 1) chemical data, 2) clinical data, and 3) molecular biology/biochemistry data.
  • IntAct (Protein Interaction Database)
    Provides a freely available, open source database system and analysis tools for protein interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.
  • DIP (Database of Interacting Proteins)
    The DIPTM database catalogs experimentally determined interactions between proteins.
  • SitesBase
    SitesBase is a database of known ligand binding sites within the PDB which is navigable by PDB identifier or ligand 3 letter code e.g. NAD.
  • BioGRID
    A freely accessible database of protein and genetic interactions.
  • MINT, Molecular Interactions Database
    MINT focuses on experimentally verified protein interactions mined from the scientific literature by expert curators.



    Resources complied with special thanks to Indiana University's chemical informatics & cyberinfrastructure collaboratory.